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    Specimen Jan 25, 2022

    Aphelenchus avenae

    AustraliaNew South WalesNarromine
    Sequenced

    Record

    Dataset
    Australian Microbiome 18S (Eukaryote) Dataset of Terrestrial Samples
    Basis of record
    Material sample

    Taxon

    Scientific name
    Aphelenchus avenae
    Taxon ID
    ASV:094c05fb6139b792ef9aefda0415a023
    Kingdom
    Animalia
    Phylum
    Nematoda
    Class
    Chromadorea
    Order
    Rhabditida
    Family
    Aphelenchidae
    Genus
    Aphelenchus
    GBIF Backbone Taxonomy

    Aphelenchus avenae Bastian, 1865

    KingdomAnimaliaPhylumNematodaClassChromadoreaOrderRhabditidaFamilyAphelenchidaeGenusAphelenchusSpeciesAphelenchus avenae
    • Taxon ID not found
    Catalogue of Life

    Aphelenchus avenae Bastian, 1865

    DomainEukaryotaKingdomAnimaliaPhylumNematodaClassChromadoreaSubclassChromadoriaOrderRhabditidaSuborderTylenchinaInfraorderTylenchomorphaSuperfamilyAphelenchoideaFamilyAphelenchidaeGenusAphelenchusSpeciesAphelenchus avenae
    • Taxon ID not found

    Location

    Continent
    Oceania
    Inferred
    Country or area
    Australia
    Country derived from coordinatesInferred
    Decimal latitude
    -31.973
    Country derived from coordinates
    Decimal longitude
    148.037
    Country derived from coordinates
    Geodetic datum
    WGS84
    Country derived from coordinatesGeodetic datum assumed WGS84Inferred
    Location according to GADM
    AustraliaNew South WalesNarromine
    Loading map...

    Occurrence

    Occurrence ID
    102.100.100/401664:094c05fb6139b792ef9aefda0415a023
    Recorded by
    • Jeff Powell
    Organism quantity
    1
    Organism quantity type
    DNA sequence reads
    Sex
    Occurrence status
    Present
    Inferred
    Event ID
    102.100.100/401664
    Event date
    2022-01-25
    Sample size value
    100,933
    Sample size unit
    DNA sequence reads
    Material sample ID
    102.100.100/401664

    Other

    Record licence
    CC0 1.0
    Inferred
    Identifier
    102.100.100/401664:094c05fb6139b792ef9aefda0415a023
    GBIF ID
    5230745874

    DNA derived data

    0000014
    Soil [ENVO_00001998]
    0000045
    V9
    0000012
    1 Conservation and Natural Environments
    0000013
    1.3.3 Residual native cover
    0000087
    PR2;version_5.0.0_SSU_UTAX|GBIF backbone;2023-08-28
    0000044
    18S
    0000085
    blast+;2.16.0;qcov_hsp_perc 50;perc_identity 70;word_size 7;max_target_seqs 1;Only ZOTUs classifying to target kingdom/domain retained;GBIF_Backbone (2023-08-28) used to assign taxonomy, if scientificName matches at taxonomic levels species to phylum
    0000041
    Paired
    0000086
    blast+;2.16.0;qcov_hsp_perc 50;perc_identity 70;word_size 7;max_target_seqs 1
    0000090
    https://research.csiro.au/ambsm/5-bioinformatics/meth_5-1-amplicon-analysis/
    pcr_primer_name_reverse
    EukB
    0000091
    https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/401664
    pcr_primer_forward
    Non-indexed: GTACACACCGCCCGTC | indexed:GTACACACCGCCCGTCG
    pcr_primer_name_forward
    1391F
    pcr_primer_reference
    Stoeck T, Bass D, Nebel M, Christen R, Jones MD, Breiner HW, Richards TA. Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water. Mol Ecol. 2010 Mar;19 Suppl 1:21-31. doi: 10.1111/j.1365-294X.2009.04480.x. PMID: 20331767| EukB: Medlin LK, Elwood HJ, Stickel S, Sogin ML (1988) The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene, 71, 491–499.
    pcr_primer_reverse
    TGATCCTTCTGCAGGTTCACCTAC
    dna_sequence
    GCTGCCCGGGACTGAGCCATTTCGAGAAAATCGGGGATTGCTGATTTCTGTTCTTTCGGGAACAGGCTTTGGCGAAAACCGATTTAATCGCAGTGGCTTGAACCGGGCAAAAGTCGTAACAAGGTAGCT
    0000028
    Free-living

    Extended measurement or fact

    109 rows
    Measurement type
    depth_lower
    Whether the record has geospatial issues.
    0.1
    Measurement unit
    meter
    Measurement type
    depth_upper
    Whether the record has geospatial issues.
    0
    Measurement unit
    meter
    Measurement type
    depth
    Whether the record has geospatial issues.
    0
    Measurement unit
    meter
    Measurement type
    dna_concentration_submitter
    Measurement method
    dna_concentration_submitter_meth
    Measurement unit
    nanogram per microliter
    Measurement type
    dna_concentration_submitter_meth
    Measurement type
    ammonium_nitrogen_wt
    Whether the record has geospatial issues.
    10
    Measurement method
    ammonium_nitrogen_wt_meth
    Measurement unit
    milligram per kilogram
    Measurement type
    ammonium_nitrogen_wt_meth
    Whether the record has geospatial issues.
    meth_2.1 (https://research.csiro.au/ambsm/)
    Measurement type
    arsenic
    Measurement method
    arsenic_meth
    Measurement unit
    microgram per kilogram
    Measurement type
    arsenic_meth
    Measurement type
    boron_hot_cacl2
    Whether the record has geospatial issues.
    1.1
    Measurement method
    boron_hot_cacl2_meth
    Measurement unit
    milligram per kilogram
    Measurement type
    boron_hot_cacl2_meth
    Whether the record has geospatial issues.
    meth_2.1 (https://research.csiro.au/ambsm/)
    Measurement type
    cadmium
    Measurement method
    cadmium_meth
    Measurement unit
    microgram per kilogram
    Measurement type
    cadmium_meth
    Measurement type
    chromium
    Measurement method
    chromium_meth
    Measurement unit
    microgram per kilogram
    Measurement type
    chromium_meth
    Measurement type
    clay
    Whether the record has geospatial issues.
    28.82
    Measurement method
    clay_meth
    Measurement unit
    percent
    Measurement type
    clay_meth
    Whether the record has geospatial issues.
    meth_2.1 (https://research.csiro.au/ambsm/)
    Measurement type
    cobalt
    Measurement method
    cobalt_meth
    Measurement unit
    microgram per kilogram
    Measurement type
    cobalt_meth
    Measurement type
    color
    Whether the record has geospatial issues.
    DKBR
    Measurement method
    color_meth
    Measurement type
    color_meth
    Whether the record has geospatial issues.
    meth_2.1 (https://research.csiro.au/ambsm/)
    Measurement type
    conductivity
    Whether the record has geospatial issues.
    0.074
    Measurement method
    conductivity_meth
    Measurement unit
    decisiemens per meter
    Measurement type
    conductivity_meth
    Whether the record has geospatial issues.
    meth_2.1 (https://research.csiro.au/ambsm/)
    Measurement type
    coarse_sand
    Measurement method
    coarse_sand_meth
    Measurement unit
    percent
    Measurement type
    coarse_sand_meth
    Measurement type
    days_since_planting
    Measurement unit
    days
    Measurement type
    density
    Measurement method
    density_meth
    Measurement unit
    kilogram per cubic meter
    Measurement type
    density_meth
    Measurement type
    dtpa_copper
    Whether the record has geospatial issues.
    0.56
    Measurement method
    dtpa_copper_meth
    Measurement unit
    milligram per kilogram
    Measurement type
    dtpa_copper_meth
    Whether the record has geospatial issues.
    meth_2.1 (https://research.csiro.au/ambsm/)
    Measurement type
    dtpa_iron
    Whether the record has geospatial issues.
    16.3
    Measurement method
    dtpa_iron_meth
    Measurement unit
    milligram per kilogram
    Measurement type
    dtpa_iron_meth
    Whether the record has geospatial issues.
    meth_2.1 (https://research.csiro.au/ambsm/)
    Measurement type
    dtpa_manganese
    Whether the record has geospatial issues.
    41.71
    Measurement method
    dtpa_manganese_meth
    Measurement unit
    milligram per kilogram
    Measurement type
    dtpa_manganese_meth
    Whether the record has geospatial issues.
    meth_2.1 (https://research.csiro.au/ambsm/)
    Measurement type
    dtpa_zinc
    Whether the record has geospatial issues.
    0.65
    Measurement method
    dtpa_zinc_meth
    Measurement unit
    milligram per kilogram
    Measurement type
    dtpa_zinc_meth
    Whether the record has geospatial issues.
    meth_2.1 (https://research.csiro.au/ambsm/)
    Measurement type
    elev
    Measurement unit
    meter
    Measurement type
    exc_aluminium
    Whether the record has geospatial issues.
    0.03
    Measurement method
    exc_aluminium_meth
    Measurement unit
    milliequivalents per 100 grams
    Measurement type
    exc_aluminium_meth
    Whether the record has geospatial issues.
    meth_2.1 (https://research.csiro.au/ambsm/)
    Measurement type
    exc_calcium
    Whether the record has geospatial issues.
    9.43
    Measurement method
    exc_calcium_meth
    Measurement unit
    milliequivalents per 100 grams
    Measurement type
    exc_calcium_meth
    Whether the record has geospatial issues.
    meth_2.1 (https://research.csiro.au/ambsm/)
    Measurement type
    exc_magnesium
    Whether the record has geospatial issues.
    1.63
    Measurement method
    exc_magnesium_meth
    Measurement unit
    milliequivalents per 100 grams
    Measurement type
    exc_magnesium_meth
    Whether the record has geospatial issues.
    meth_2.1 (https://research.csiro.au/ambsm/)
    Measurement type
    exc_potassium
    Whether the record has geospatial issues.
    1.31
    Measurement method
    exc_potassium_meth
    Measurement unit
    milliequivalents per 100 grams
    Measurement type
    exc_potassium_meth
    Whether the record has geospatial issues.
    meth_2.1 (https://research.csiro.au/ambsm/)
    Measurement type
    exc_sodium
    Whether the record has geospatial issues.
    0.02
    Measurement method
    exc_sodium_meth
    Measurement unit
    milliequivalents per 100 grams
    Measurement type
    exc_sodium_meth
    Whether the record has geospatial issues.
    meth_2.1 (https://research.csiro.au/ambsm/)
    Measurement type
    fine_sand
    Measurement method
    fine_sand_meth
    Measurement unit
    percent
    Measurement type
    fine_sand_meth
    Measurement type
    fresh_weight
    Measurement method
    fresh_weight_meth
    Measurement unit
    gram
    Measurement type
    fresh_weight_meth
    Measurement type
    gravel
    Whether the record has geospatial issues.
    0
    Measurement method
    gravel_meth
    Measurement unit
    percent
    Measurement type
    gravel_meth
    Whether the record has geospatial issues.
    meth_2.1 (https://research.csiro.au/ambsm/)
    Measurement type
    hyperspectral_analysis
    Measurement method
    hyperspectral_analysis_meth
    Measurement type
    hyperspectral_analysis_meth
    Measurement type
    lead
    Measurement method
    lead_meth
    Measurement unit
    microgram per kilogram
    Measurement type
    lead_meth
    Measurement type
    local_class
    Whether the record has geospatial issues.
    Sodosol
    Measurement method
    local_class_meth
    Measurement type
    local_class_meth
    Whether the record has geospatial issues.
    meth_2.27 (https://research.csiro.au/ambsm/)
    Measurement type
    microbial_biomass
    Measurement method
    microbial_biomass_meth
    Measurement type
    microbial_biomass_meth
    Measurement type
    molybdenum
    Measurement method
    molybdenum_meth
    Measurement unit
    microgram per kilogram
    Measurement type
    molybdenum_meth
    Measurement type
    nitrate_nitrogen
    Whether the record has geospatial issues.
    7
    Measurement method
    nitrate_nitrogen_meth
    Measurement unit
    milligram per kilogram
    Measurement type
    nitrate_nitrogen_meth
    Whether the record has geospatial issues.
    meth_2.1 (https://research.csiro.au/ambsm/)
    Measurement type
    organic_carbon
    Whether the record has geospatial issues.
    1.25
    Measurement method
    organic_carbon_meth
    Measurement unit
    percent
    Measurement type
    organic_carbon_meth
    Whether the record has geospatial issues.
    meth_2.1 (https://research.csiro.au/ambsm/)
    Measurement type
    ph
    Whether the record has geospatial issues.
    6
    Measurement method
    ph_meth
    Measurement type
    ph_meth
    Whether the record has geospatial issues.
    meth_2.1 (https://research.csiro.au/ambsm/)
    Measurement type
    ph_solid_h2o
    Whether the record has geospatial issues.
    6.6
    Measurement method
    ph_solid_h2o_meth
    Measurement type
    ph_solid_h2o_meth
    Whether the record has geospatial issues.
    meth_2.1 (https://research.csiro.au/ambsm/)
    Measurement type
    phosphorus_colwell
    Whether the record has geospatial issues.
    14
    Measurement method
    phosphorus_colwell_meth
    Measurement unit
    milligram per kilogram
    Measurement type
    phosphorus_colwell_meth
    Whether the record has geospatial issues.
    meth_2.1 (https://research.csiro.au/ambsm/)
    Measurement type
    plant_stage
    Measurement method
    plant_stage_meth
    Measurement type
    plant_stage_meth
    Measurement type
    potassium_colwell
    Whether the record has geospatial issues.
    599
    Measurement method
    potassium_colwell_meth
    Measurement unit
    milligram per kilogram
    Measurement type
    potassium_colwell_meth
    Whether the record has geospatial issues.
    meth_2.1 (https://research.csiro.au/ambsm/)
    Measurement type
    root_length
    Measurement method
    root_length_meth
    Measurement unit
    centimeter
    Measurement type
    root_length_meth
    Measurement type
    sand
    Whether the record has geospatial issues.
    58.8
    Measurement method
    sand_meth
    Measurement unit
    percent
    Measurement type
    sand_meth
    Whether the record has geospatial issues.
    meth_2.1 (https://research.csiro.au/ambsm/)
    Measurement type
    selenium
    Measurement method
    selenium_meth
    Measurement unit
    microgram per kilogram
    Measurement type
    selenium_meth
    Measurement type
    shoot_length
    Measurement method
    shoot_length_meth
    Measurement unit
    centimeter
    Measurement type
    shoot_length_meth
    Measurement type
    silt
    Whether the record has geospatial issues.
    12.38
    Measurement method
    silt_meth
    Measurement unit
    percent
    Measurement type
    silt_meth
    Whether the record has geospatial issues.
    meth_2.1 (https://research.csiro.au/ambsm/)
    Measurement type
    slope_aspect
    Measurement method
    slope_aspect_meth
    Measurement unit
    direction or degrees
    Measurement type
    slope_aspect_meth
    Measurement type
    slope_gradient
    Measurement method
    slope_gradient_meth
    Measurement unit
    percent
    Measurement type
    slope_gradient_meth
    Measurement type
    sulphur
    Whether the record has geospatial issues.
    3.3
    Measurement method
    sulphur_meth
    Measurement unit
    milligram per kilogram
    Measurement type
    sulphur_meth
    Whether the record has geospatial issues.
    meth_2.1 (https://research.csiro.au/ambsm/)
    Measurement type
    temp
    Measurement method
    temp_meth
    Measurement unit
    degree celsius
    Measurement type
    temp_meth
    Measurement type
    texture
    Whether the record has geospatial issues.
    2.5
    Measurement method
    texture_meth
    Measurement type
    texture_meth
    Whether the record has geospatial issues.
    meth_2.1 (https://research.csiro.au/ambsm/)
    Measurement type
    total_nitrogen
    Measurement method
    total_nitrogen_meth
    Measurement unit
    milligram per kilogram
    Measurement type
    total_nitrogen_meth
    Measurement type
    vegetation_dom_grasses
    Measurement method
    vegetation_dom_grasses_meth
    Measurement unit
    percent
    Measurement type
    vegetation_dom_grasses_meth
    Measurement type
    vegetation_dom_shrubs
    Measurement method
    vegetation_dom_shrubs_meth
    Measurement unit
    percent
    Measurement type
    vegetation_dom_shrubs_meth
    Measurement type
    vegetation_dom_trees
    Measurement method
    vegetation_dom_trees_meth
    Measurement unit
    percent
    Measurement type
    vegetation_dom_trees_meth
    Measurement type
    vegetation_total_cover
    Measurement method
    vegetation_total_cover_meth
    Measurement unit
    percent
    Measurement type
    vegetation_total_cover_meth
    Measurement type
    water_content
    Measurement method
    water_content_soil_meth
    Measurement unit
    percent
    Measurement type
    water_content_soil_meth

    Citation

    Please use this citation in publications
    Australian Microbiome (2025). Australian Microbiome 18S (Eukaryote) Dataset of Terrestrial Samples. GBIF Metabarcoding Test organisation. Occurrence dataset https://doi.org/10.21373/rwqr9f accessed via GBIF.org on 2025-07-18. https://gbif.org/occurrence/5230745874
    API access
    Dataset
    Australian Microbiome 18S (Eukaryote) Dataset of Terrestrial Samples
    Publisher
    GBIF Metabarcoding Test organisation
    Last crawled
    2025-07-14T10:18:12.049